Timeline
2022
Major version v0.6 LightGBM Algorithm
- Light Gradient Boosting Machine (LightGBM) algorithm added
- Shapley Values analysis section added in Random Forest and LightGMB algorithms
- Confidence ellipses now can be displayed at PCA Analysis
- SVG vector image format added. Now plots and charts can be downloaded as .svg
Major version v0.5 FTIR support
- Fourier transform infrared (FTIR) format is now supported
- The platform now allows work with infrared spectroscopy data in all modules
- FTIR Specific preprocessing steps added
2021
Minor version v0.4.5
- ROC curves added in all modules
- Precision-Recall curves added in all modules
Occurrence of the p019 Gene in the blaKPC-Harboring Plasmids: Adverse Clinical Impact for Direct Tracking of KPC-Producing Klebsiella pneumoniae by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry
An Improved Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Data Analysis Pipeline for the Identification of Carbapenemase-Producing Klebsiella pneumoniae
Detection of azole resistance in Aspergillus fumigatus complex isolates using MALDI-TOF mass spectrometry
Multicenter Performance Evaluation of MALDI-TOF MS for Rapid Detection of Carbapenemase Activity in Enterobacterales: The Future of Networking Data Analysis With Online Software
Video Tutorials Release
Major version v0.4 Validation Module
- Validation Module added
- Now all models can be validated easily
- Results can be downloaded as .csv
- Resulting plots can be download as images
Rapid and Reproducible MALDI-TOF-Based Method for the Detection of Vancomycin-Resistant Enterococcus faecium Using Classifying Algorithms
2020
Implementation of MALDI-TOF Mass Spectrometry and Peak Analysis: Application to the Discrimination of Cryptococcus neoformans Species Complex and Their Interspecies Hybrids
Minor version v0.3.5 K-Nearest Neighbors
- K- Nearest Neighbors (KNN) added
- Neighborhood Components Analysis (NCA) added in KNN module
Minor version v0.3.5 Carbapenemases detection
- Carbapenemases detection module added for specific institutions
- FAQ´s section added
2019
Major version v0.3 Random Forest Analysis
- Random Forest (RF) Analysis added
- Module for blind sample identification added
Minor version v0.2.5
- Biomarker analysis module added
- Reproducibility analysis improvements
- Metrics for K-Fold validation added
- F1 score
- Clinical scores
- Classification scores
- Feature importances added in all analysis
2018
Major Version v2 Support Vector Machine Analysis
- Support Vector Machine (SVM) Analysis added
- MALDI-TOF Bruker© format support added
- K-fold cross validation added
- Categories section added for studies
Minor version v0.1.5
- Reproducibility Analysis Module implementation
- Peak findings improvements
- Preprocessing improvements
- Variance stabilization added
- Mass filtering improvements
- Alignment improvements
- Automatic replication spectra added
Major Version v0.1 PLS-DA Module
- Partial Least Squares Discriminant Analysis (PLS-DA) implementation
- MALDI-TOF open format support improvements
- Hierarchical Clustering (HC) improvements
- Principal Components Analysis (PCA) improvements
- Smoothing added
- Baseline subtraction added
Official Release of RUO Clover Software
